JOURNAL ARTICLE
A reference genome for the Andean cavefish Trichomycterus rosablanca (Siluriformes, Trichomycteridae): Building genomic resources to study evolution in cave environments.
Published In: Journal of Heredity, 2024, v. 115, n. 3. P. 311 1 of 3
Database: Academic Search Ultimate 2 of 3
Authored By: Cadena, Carlos Daniel; Pabón, Laura; DoNascimiento, Carlos; Abueg, Linelle; Tilley, Tatiana; O-Toole, Brian; Absolon, Dominic; Sims, Ying; Formenti, Giulio; Fedrigo, Olivier; Jarvis, Erich D; Torres, Mauricio 3 of 3
Abstract
This article focuses on the development of a high-quality, chromosome-scale reference genome for *Trichomycterus rosablanca*, a blind and depigmented cavefish species endemic to the karstic caves of the Eastern Andes in Colombia. Using long-read PacBio HiFi sequencing and Hi-C scaffolding, the assembled diploid nuclear genome spans approximately 1.04 Gb across 27 chromosomes, with high completeness indicated by BUSCO scores exceeding 95%. This genomic resource represents the first reference genome for the genus *Trichomycterus* and aims to facilitate research into the genetic and molecular mechanisms underlying convergent evolution of cave-adapted phenotypes, such as eye and pigmentation loss, in multiple independent lineages of these catfishes. The study also outlines ongoing comparative and population genomic analyses to elucidate evolutionary processes shaping phenotypic adaptation in cave environments.
Additional Information
- Source:Journal of Heredity. 2024/05, Vol. 115, Issue 3, p311
- Document Type:Article
- Subject Area:Environmental Sciences
- Publication Date:2024
- ISSN:0022-1503
- DOI:10.1093/jhered/esae019
- Accession Number:177220054
- Copyright Statement:Copyright of Journal of Heredity is the property of Oxford University Press / USA and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
Looking to go deeper into this topic? Look for more articles on EBSCOhost.