JOURNAL ARTICLE
NICE-FF: A non-empirical, intermolecular, consistent, and extensible force field for nucleic acids and beyond.
Published In: Journal of Chemical Physics, 2023, v. 159, n. 24. P. 1 1 of 3
Database: Academic Search Ultimate 2 of 3
Authored By: Demir, Gözde İniş; Tekin, Adem 3 of 3
Abstract
The article focuses on the development and validation of NICE-FF (Non-empirical, Intermolecular, Consistent and Extensible Force Field), a new ab initio intermolecular force field parametrized via machine learning (ML) techniques for nucleic acids and related organic molecules. NICE-FF was trained on extensive dimer interaction energy datasets computed at the spin component scaled-MI-second order Møller–Plesset perturbation theory (SCS-MI-MP2) level and employs a buffered 14-7 potential form. Its performance was benchmarked against popular classical force fields using the S22 dataset, where NICE-FF demonstrated superior accuracy in reproducing high-level ab initio interaction energies. The force field was further validated through successful predictions of two- and three-dimensional crystal structures of DNA bases and other organic molecules, including hypoxanthine, uracil, pyrazinamide, 9-methylhypoxanthine, and theophylline, using the in-house crystal structure prediction tool FFCASP. The study highlights NICE-FF's extensibility to new atom types and its potential for broader application in modeling organic molecular crystals with improved accuracy and computational efficiency.
Additional Information
- Source:Journal of Chemical Physics. 2023/12, Vol. 159, Issue 24, p1
- Document Type:Article
- Subject Area:Science
- Publication Date:2023
- ISSN:0021-9606
- DOI:10.1063/5.0176641
- Accession Number:174524203
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